Handling COVID-19 Data Wrangling Challenges

The COVID-19 pandemic is a challenge that is ultimately solved by our ability to curate, publish, and share data openly using key principles such as:

• Open Data where structured data is published to the Web using open standard formats

• Linked Data where hyperlinks are used to enhance published Open Data by functioning as unambiguous identifiers for entities, entity types, and entity relationship types.

Adhering to the principles above reduce the amount of Data Wrangling overhead encountered by subject-matter experts, researchers, government departments, medical professionals, and many others that are on the frontlines of this global pandemic. Here is a collection of articles and live demonstrations about progressively updatig the massive LOD Cloud Knowledge Graph with up to date data, information, and knowledge about the SARS-CoV-2 virus and its associated COVID-19 disease.

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DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
Knowledge Graph
A collection of Entities, Entity Types, and Entity Relationship Types that manifests as an intelligible Web of Data informed by an Ontology.
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
Linked Data
A principled approach to Structured Data representation that manifests as a Web of Data..
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
Latest Uniprot Snapshot related to COVID19 and SARS-Cov-2
SPARQL-generated report, in HTML format, about the latest Uniprot Snapshot related to COVID19 and SARS-Cov-2. This report uses SPARQL's SAMPLE() function to produce an index for further exploration using the follow-your-nose pattern enabled by deploying RDF sentences using Linked Data principles.
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
Open Data
Open-Standards-based Structured Data Representation based on the use of standards (e.g., CSV, JSON, RDF-Turtle, JSON-LD, HTML+Microdata, HTML+RDFa, RDF/XML, etc.) -- thereby making structured data reusable across a variety of operating systems, applications, frameworks, services, and platforms.
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
Daily COVID-19 Disease Tracking by States across the USA
SPARQL-generated report, in HTML format, covering daily tracking of COVID19 disease by States across the USA. This is the result of transforming Google Spreadsheet Data (with CSV format negotiated RESTfully) to Linked Data using the Virtuoso Sponger Middleware instance that underlies the URIBurner Service (a dynamic LOD Cloud Knowledge Graph hub).
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
Linked Open Data (LOD) Cloud
A Web of Data comprising Entity Description Documents created using RDF that have been deployed using Linked Data principles. The key defining characteristics of this kind of Web are: 1) every entity (thing) is identified using a hyperlink (specifically, HTTP URI); 2) every entity is described using structured RDF sentence collections where a hyperlink identifies the subject and predicate, while a hyperlink or literal (typed or untyped) identifies the object.
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
COVID-19 Research Literature from Kaggle Dataset
SPARQL-generated report, in HTML format, covering COVID19 disease related literature published as an RDF-NTriples dataset to Kaggle that's been loaded to the LOD Cloud Knowledge Graph via our LOD Cloud Cache instance.
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
SARS-CoV-2 Specimens from Nextstrain with NIH Cross References
SPARQL-generated report, in HTML format, about specimens submitted to @nextstrain that have been cross-referenced with genomic information collated by the U.S National Institutes of Health (NIH).
DBpedia-Live Page about Coronavirus Pandemic
Index of posts associated with COVID19 and Knowledge Graph that I've published to Twitter.
COVID-19 Disease Tracking by States across the USA
SPARQL-generated report, in HTML format,tracking by States in the USA. This is the result of transforming Open Data (in the form of CSV docs) to Linked Data using the Virtuoso Sponger Middleware instance that underlies the URIBurner Service (a dynamic LOD Cloud Knowledge Graph hub).
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Daily COVID-19 Disease Tracking by States across the USA
SPARQL-generated report, in HTML format, covering daily tracking of COVID19 disease by States across the USA. This is the result of transforming Google Spreadsheet Data (with CSV format negotiated RESTfully) to Linked Data using the Virtuoso Sponger Middleware instance that underlies the URIBurner Service (a dynamic LOD Cloud Knowledge Graph hub).
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Meshing COVID-19 Data across Our World In Data, Bing, Divoc, Healthdata, and DBpedia
SPARQL generated page that meshes COVID-19 Data across Our World In Data, Bing, Divoc, Healthdata.org Projects, and the LOD Cloud Knowledge Graph while also producing an index of Dashboards.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Data Wrangling
The act or process of mapping and transforming structured data in one form (or format) to another with the intention of increasing it access and usability.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Linked Data
A principled approach to Structured Data representation that manifests as a Web of Data..
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Meshing COVID-19 Data across Our World In Data, Bing, Divoc, and DBpedia
SPARQL generated page that meshes COVID-19 Data across Our World In Data, Bing, Divoc, and the LOD Cloud Knowledge Graph while also producing an index of Dashboards. Links in this variant of the SPARQL Results page resove to a Faceted Browsing interface to exposes the undelying data fusion that's occurred via DBpedia cross references etc.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
SARS-CoV-2 Specimens from Nextstrain with NIH Cross References
SPARQL-generated report, in HTML format, about specimens submitted to @nextstrain that have been cross-referenced with genomic information collated by the U.S National Institutes of Health (NIH).
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Latest Uniprot Snapshot related to COVID19 and SARS-Cov-2
SPARQL-generated report, in HTML format, about the latest Uniprot Snapshot related to COVID19 and SARS-Cov-2. This report uses SPARQL's SAMPLE() function to produce an index for further exploration using the follow-your-nose pattern enabled by deploying RDF sentences using Linked Data principles.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Linked Open Data (LOD) Cloud
A Web of Data comprising Entity Description Documents created using RDF that have been deployed using Linked Data principles. The key defining characteristics of this kind of Web are: 1) every entity (thing) is identified using a hyperlink (specifically, HTTP URI); 2) every entity is described using structured RDF sentence collections where a hyperlink identifies the subject and predicate, while a hyperlink or literal (typed or untyped) identifies the object.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Meshing COVID-19 Data across various tracking data sources (Bing, Divoc, Our World In Data)
SPARQL generated page that meshes COVID-19 Data across various tracking data sources and the LOD Cloud Knowledge Graph via DBpedia.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Open Data
Open-Standards-based Structured Data Representation based on the use of standards (e.g., CSV, JSON, RDF-Turtle, JSON-LD, HTML+Microdata, HTML+RDFa, RDF/XML, etc.) -- thereby making structured data reusable across a variety of operating systems, applications, frameworks, services, and platforms.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
COVID-19 Disease Tracking by States across the USA
SPARQL-generated report, in HTML format,tracking by States in the USA. This is the result of transforming Open Data (in the form of CSV docs) to Linked Data using the Virtuoso Sponger Middleware instance that underlies the URIBurner Service (a dynamic LOD Cloud Knowledge Graph hub).
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
COVID-19 Research Literature from Kaggle Dataset
SPARQL-generated report, in HTML format, covering COVID19 disease related literature published as an RDF-NTriples dataset to Kaggle that's been loaded to the LOD Cloud Knowledge Graph via our LOD Cloud Cache instance.
Data Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement
A post about best-practices for rapidly integrating new Open Data associated with the COVID-19 disease and SARS-CoV-2 virus into the LOD Cloud Knowledge Graph.
Knowledge Graph
A collection of Entities, Entity Types, and Entity Relationship Types that manifests as an intelligible Web of Data informed by an Ontology.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Meshing COVID-19 Data across Our World In Data, Bing, Divoc, and DBpedia
SPARQL generated page that meshes COVID-19 Data across Our World In Data, Bing, Divoc, and the LOD Cloud Knowledge Graph while also producing an index of Dashboards. Links in this variant of the SPARQL Results page resove to a Faceted Browsing interface to exposes the undelying data fusion that's occurred via DBpedia cross references etc.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Linked Open Data (LOD) Cloud
A Web of Data comprising Entity Description Documents created using RDF that have been deployed using Linked Data principles. The key defining characteristics of this kind of Web are: 1) every entity (thing) is identified using a hyperlink (specifically, HTTP URI); 2) every entity is described using structured RDF sentence collections where a hyperlink identifies the subject and predicate, while a hyperlink or literal (typed or untyped) identifies the object.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
COVID-19 Research Literature from Kaggle Dataset
SPARQL-generated report, in HTML format, covering COVID19 disease related literature published as an RDF-NTriples dataset to Kaggle that's been loaded to the LOD Cloud Knowledge Graph via our LOD Cloud Cache instance.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Knowledge Graph
A collection of Entities, Entity Types, and Entity Relationship Types that manifests as an intelligible Web of Data informed by an Ontology.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
COVID-19 Disease Tracking by States across the USA
SPARQL-generated report, in HTML format,tracking by States in the USA. This is the result of transforming Open Data (in the form of CSV docs) to Linked Data using the Virtuoso Sponger Middleware instance that underlies the URIBurner Service (a dynamic LOD Cloud Knowledge Graph hub).
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Linked Data
A principled approach to Structured Data representation that manifests as a Web of Data..
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Daily COVID-19 Disease Tracking by States across the USA
SPARQL-generated report, in HTML format, covering daily tracking of COVID19 disease by States across the USA. This is the result of transforming Google Spreadsheet Data (with CSV format negotiated RESTfully) to Linked Data using the Virtuoso Sponger Middleware instance that underlies the URIBurner Service (a dynamic LOD Cloud Knowledge Graph hub).
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Meshing COVID-19 Data across Our World In Data, Bing, Divoc, Healthdata, and DBpedia
SPARQL generated page that meshes COVID-19 Data across Our World In Data, Bing, Divoc, Healthdata.org Projects, and the LOD Cloud Knowledge Graph while also producing an index of Dashboards.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Open Data
Open-Standards-based Structured Data Representation based on the use of standards (e.g., CSV, JSON, RDF-Turtle, JSON-LD, HTML+Microdata, HTML+RDFa, RDF/XML, etc.) -- thereby making structured data reusable across a variety of operating systems, applications, frameworks, services, and platforms.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Latest Uniprot Snapshot related to COVID19 and SARS-Cov-2
SPARQL-generated report, in HTML format, about the latest Uniprot Snapshot related to COVID19 and SARS-Cov-2. This report uses SPARQL's SAMPLE() function to produce an index for further exploration using the follow-your-nose pattern enabled by deploying RDF sentences using Linked Data principles.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
SARS-CoV-2 Specimens from Nextstrain with NIH Cross References
SPARQL-generated report, in HTML format, about specimens submitted to @nextstrain that have been cross-referenced with genomic information collated by the U.S National Institutes of Health (NIH).
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Data Wrangling
The act or process of mapping and transforming structured data in one form (or format) to another with the intention of increasing it access and usability.
Data-Wrangling and Progressive LOD Cloud Knowledge Graph Enhancement — Beyond Spreadsheets
A post about finalizing infrastructure for progressive updates to the LOD Cloud Knowledge Graph in regards to COVID-19 that covers negation of issues posed by Google Spreadsheet limitations.
Meshing COVID-19 Data across various tracking data sources (Bing, Divoc, Our World In Data)
SPARQL generated page that meshes COVID-19 Data across various tracking data sources and the LOD Cloud Knowledge Graph via DBpedia.